Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQQPANCNGQLNQLIPCLSYVQGQATQPAQGCCSGLKSIAGS-------NPACLCSLISANAGSIPGINSTLALELPAKCNLQGL----NPSLCSGKF
1SIY Chain:A ((2-89))
-----TCGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSC--LKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNS--
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36634 for 543 contacts (-67.5/contact) +
2D Compatibility (PS) -7828 + (NN) -3117 + (LL) 852
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -52727.0 ( -97.10 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: