Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DPDQQPPCNSFMSVLSCQSATMSESAMPSPACCAALQKFHD---------ADCLCQVLLSARSAAATANV-PFNLKAALEIPMKCALRTV-SAPPGYSCGGMVVPRSPPPTST
1SIY Chain:A ((2-89))
-----TCGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSCL----KA---AAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNS------------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33438 for 563 contacts (-59.4/contact) +
2D Compatibility (PS) -8345 + (NN) -5727 + (LL) 876
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -48984.0 ( -87.01 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: