Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGNASPDTEAWKLAPCEAAAQNEKAAPSKSCCLQVKKIGQ-N-------PDCLCAVMLSNTAKSS-GIKPEVAVTIPKRCNLADRPVGYKCGAYTLP
1AFH Chain:A ((3-80))
-------SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNA-AAGVSGLNAGNAASIPSKCGVSIP------------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1520 for 509 contacts (3.0/contact) +
2D Compatibility (PS) -7081 + (NN) -3463 + (LL) 656
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -12118.0 ( -23.81 by residue)
QMean score : 0.125
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: