Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTSCGPVVTSLYPCVSYIMNGGNTVPAAQCCNGIRNLNTMAQTTNDRRAVCTCIKNAVSQSGFSYTNLNLNLAAGLPRKCGVNIPYQISPNTDCNSVH
1SIY Chain:A ((1-91))
--MTCGQVQGNLAQCIGFLQKGG--VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAG----AVRGINPNNAEALPGKCGVNIPYKISTSTNCNSIN
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76572 for 700 contacts (-109.4/contact) +
2D Compatibility (PS) -9465 + (NN) -3820 + (LL) 360
1D Compatibility (HY) -7600 + (ID) 2100
Total energy: -99197.0 ( -141.71 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: