Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSKTCNAIKRLLQKESSFVGKDENGNSYYESSEGKRWVMYSNVSEPTTVSPEWHVWLHYTDDAMPVNSKKRKIKRIPNLTGTKDAYYPNQKIKNYYERWNPNN
2NTP Chain:A ((284-316))
--------------------GKDKNGNTIWFNPEDSRFFEYKSYGAGATVSKDRRQLTDAQAAEYTQSKVLGDWTPTLP-------------------------
General information:
TITO was launched using:
RESULT:
Template:
2NTP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4283 for 100 contacts (42.8/contact) +
2D Compatibility (PS) -3778 + (NN) -4985 + (LL) 3648
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -3832.0 ( -38.32 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_2NTP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NTP-query.scw
PDB file :
Tito_Scwrl_2NTP.pdb
: