Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKSDILCKRVIGIVGSGQLGKMTAIAATKLGQETHIFANAKDDPACSVANNLTIADFSDKKALESFAQSVSLVTIESENIPCDAID-IMSQYVDFYPGKRALHISQNRLREKDFIRNLGIRTADYKSIQDHNDLLEVTRAFGYPTRLKTTEMGYDGKGQYMIGNDSQVERFASFDWNAQYILEASVDLLKEVSIVVTRDKNGKVAFFPVAENHHVDGILDTSIVPAKVDSKLVQEIQQTAEKIADALDVVGILAIEFFITKNSELLVNELAPRPHNSCHWSLDACNVSQFEQLIRVICKLPMQEVVLRFPCMTKNIIGNDVY-------NTYKYLSDKRANLTIYGKKEVRGRRKMGHVNIDLS |
| 3AX6 Chain:A ((18-349)) | -------------------------LEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHIDVQTLKKLYNEGYKIHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKD---LESDVREFGFPVVQKARKG-----GVFIIKNEKDLEN----AIKGETYLEEFVEIEKELAVMVARNEKGEIACYPVVEMY------DTVIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILVNEIAPRPHNSGHYTIEACVTSQFEQHIRAIMNLPLGSTELLIPAVMVNLLGEEGYYGKPALIGLEEALAIEGLSLHFYGKKETRPYRKMGHFTVVDR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AX6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -169998 for 2449 contacts (-69.4/contact) +
2D Compatibility (PS) -33597 + (NN) -11027 + (LL) 1952
1D Compatibility (HY) -22400 + (ID) 5350
Total energy: -240420.0 ( -98.17 by residue)
QMean score : 0.394
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