Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNEVVTFGCRLNFYESELIKEALRKAERENVVVVHSCAVTNEAERQVKQKIRKIYKNDPNKEIIVVGCAVQLDPESYSNIPGVSKVLGNQDKLKTENYLLSNNKILVNDNQASKSEPALIDKFKDKSRAFIEVQNGCDHSCTFCSITEARGN---NRSVPINNIIEQIKIFVANGYQEVVFTGVDITDFGTDLFGKPSLGLMVRRVLKD-VPELKRLRLS-SIDVAEVDDELMDLI--VNESRFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCHKVKSLRSNIAYGADIIAGFPTETDEMFQDTVNLLEETNTVYLHAFPYSKRKNTPAARMPQVPENVRKERVKNLRKINKAMMSNFYQSLIGTKQSVLVEQNNIGRAENFALVKFTSKIQAKSIVKATIIGMESGYLVGSIIP |
| 3CIX Chain:A ((54-239)) | -------------------------------------------------------------------------------------------------------------------------------RAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTP-EEIVERARLAVQFGAKTIVLQS------GEDPYYMPD-------VISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYL----LRHETANPVLHRKLRPDTSFENRLNCLLTLKEL--GYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPGKICVFEKDTACIPCVM |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CIX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69098 for 1355 contacts (-51.0/contact) +
2D Compatibility (PS) -19204 + (NN) -8986 + (LL) 10348
1D Compatibility (HY) -13600 + (ID) 2250
Total energy: -102790.0 ( -75.86 by residue)
QMean score : 0.473
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