Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIVPKEMRDYTIGSGRSLLDIITEYFQELCEKSGFIKKEYRIERNVDNTFVLDRRVNEPAVTNNRKEIS
1HTT Chain:A ((4-39))
-IQAIRGMNDYLPG-ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFED
General information:
TITO was launched using:
RESULT:
Template:
1HTT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3728 for 128 contacts (-29.1/contact) +
2D Compatibility (PS) -3666 + (NN) 450 + (LL) 180
1D Compatibility (HY) -1600 + (ID) 300
Total energy: -8664.0 ( -67.69 by residue)
QMean score : 0.267
(partial model without unconserved sides chains):
PDB file :
Tito_1HTT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HTT-query.scw
PDB file :
Tito_Scwrl_1HTT.pdb
: