Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDVTILTIFPEMFPGFLNYSLAGKALEKKIWNLQVINIRFFAKDRHLTVDHIPYGGGAGMIMRPDVVGDAVDSVLSTHKDTK-FIYMTPSGTKFDQSIARELVGFPHITILCGRFEGIDQRVIDEYTPYELSIGDYILSGGEPAAMVILDVCVRLLPGVVNNSGSITEESFSYSGGVLEYPQYTRPKQWRKHRVPKILLSGNHKKISDWRQKQSQVITKRRRPELLDGEINDKFT
1UAJ Chain:A ((3-226))
---IGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLG---------------LLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQ
General information:
TITO was launched using:
RESULT:
Template:
1UAJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -191556 for 1486 contacts (-128.9/contact) +
2D Compatibility (PS) -22291 + (NN) -6664 + (LL) 216
1D Compatibility (HY) -18400 + (ID) 4300
Total energy: -242995.0 ( -163.52 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_1UAJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UAJ-query.scw
PDB file :
Tito_Scwrl_1UAJ.pdb
: