Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNKYYDSNNIFAQILRGELPCKKVYEDEDVLAFYDKYPDAPVHILVVPKSQYISYDDFIFKASAEEIVGFFKTV-REITYKYNLEKTGYRLVTNCGENGEQVVPHFHMHILGGKRLGKHVNL
3TW2 Chain:A ((15-121))
-------GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPK-KHISQIS-VAEDDDESLLGHLMIVGKKCAADLGLNK-GYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG-
General information:
TITO was launched using:
RESULT:
Template:
3TW2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80406 for 726 contacts (-110.8/contact) +
2D Compatibility (PS) -11619 + (NN) -8466 + (LL) 256
1D Compatibility (HY) -8400 + (ID) 2150
Total energy: -110785.0 ( -152.60 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_3TW2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TW2-query.scw
PDB file :
Tito_Scwrl_3TW2.pdb
: