Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKRTQYNNLVSSYARALFLVSENKLSVVRKEVEFLLAFFKSQHDVFIYLSHPMISFARKKEVIFSVNEHLSESLVKFIAVIFANKRSNLLISVLEKFLTLVR-ESENELEITIKSAETLSESNIKIITESLSFLGKIVRVDNAVDPSILGGFIVKYGFNLIDASLKSYLDRLVDLSKVEILKTRNFI |
3VG2 Chain:A ((80-122)) | ----------------------------------------------------------------------------------------------EKVKTVVQLEGDNKLVTTFKNIKSVTELNGDIITNTMT-LGDIVFKRISKRIGT--------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VG2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 2502 for 199 contacts (12.6/contact) +
2D Compatibility (PS) -4458 + (NN) 102 + (LL) 11608
1D Compatibility (HY) -3600 + (ID) 900
Total energy: 5254.0 ( 26.40 by residue)
QMean score : -0.027
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