Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQKNTLLEVADNSGAREVLCIGLLGG--------------RKSASIGDTIVVSTKSVNPKGKVEKGKVYRAVVVRVKNCIRKSDNSVIRFSSNAVVLVNNQGEPLGTRVFGPV-KKLPSGSFMKIMSLAVEVL
1SM1 Chain:I ((2-133))
-IMPQSRLDVADNSGAREIMCIRVLNSGIGGKGLTTGGGGNKRYAHVGDIIVASVKDAAPRGAVKAGDVVKAVVVRTSHAIKRADGSTIRFDRNAAVIINNQGEPRGTRVFGPVARELRDRRFMKIVSLAPEV-
General information:
TITO was launched using:
RESULT:
Template:
1SM1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 518470 for 5050 contacts (102.7/contact) +
2D Compatibility (PS) -10754 + (NN) -782 + (LL) 384
1D Compatibility (HY) 2800 + (ID) 650
Total energy: 509468.0 ( 100.88 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_1SM1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM1-query.scw
PDB file :
Tito_Scwrl_1SM1.pdb
: