Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------MNTLVNILFIMIPLLFS--VAYLVYFERKVIGAIQLRHGPSVVGPFGLLQPFADAIKLLVKEPIIPF-R-ANTILFIMAPMLTF-----ILALIVWAVIPFGAEV----ITENGQQIVIPKVIANVNIGVL--Y-VLAISSLGIYGIIVAGWSSNSNYAFLGSIRSA---AQMISYEVSMGLIVATVVITTGTLNLGEMVATKHSMPFWID--LLMMPIGVVFFISLLAETNRHPFDLPEAEAELVSGYNVEYSSMPFALFFLGEYANMI-LGSAMMTIFFLGGWYPPLKLSLLYKIPGLIWFVLKIVLLLFIFVWTRATIPRYRYDQLMRLGWKVFLPISVLWVILISGVLLFTGNLPGRGL |
| 1VKP Chain:A ((5-376)) | RESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDG---EGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDE------DTNGHIDNMCCFARPGVVLLSWTDDETDPQYERSVEALSVLSNSIDA--RGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VKP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -381998 for 2816 contacts (-135.7/contact) +
2D Compatibility (PS) -34799 + (NN) 7290 + (LL) 1500
1D Compatibility (HY) 9600 + (ID) 2500
Total energy: -400907.0 ( -142.37 by residue)
QMean score : 0.139
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