Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFLVVTLPFMIFFNNEVGNYKVQFSYGCVYYATNEYVH-AGDKFYSNYFIDSHYGREINMYPQSELLAKGYVGNTLPILISLDKDLIK
1W4S Chain:A ((63-106))
-------------------------YGCWFYRPNETFHLATRKFLEKEVFKSDY---YNKVPVSKILGKCVVMFVKEYFKLCPENFRD
General information:
TITO was launched using:
RESULT:
Template:
1W4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16023 for 173 contacts (-92.6/contact) +
2D Compatibility (PS) -4581 + (NN) -745 + (LL) 2284
1D Compatibility (HY) -5600 + (ID) 900
Total energy: -25565.0 ( -147.77 by residue)
QMean score : 0.212
(partial model without unconserved sides chains):
PDB file :
Tito_1W4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W4S-query.scw
PDB file :
Tito_Scwrl_1W4S.pdb
: