Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEQKQSKSVAIWLFLCSIMIVLMVGIGGFTRLSKAGLSITEWNPITGAFPPLNERDWLQEKSKYETTPEYKTFNYGMSMEEFRTLYLIEYVHRLFARLTGLIFILPFIYFTLKKRISKKVVIRLSIALSFGVLQAFTGWYMVKSGLVAKPHVSHYMLTLHLLLALVIFALLSYQFFNYQVRQKQTKLKISGSTVHYVGIILILIVVQIIFGAFVAGLNAGLIYNTFPLMGGHIIPKDLFFLQPTWLNIFENRATVQFIHRTLALLILVLTTVLTIKNASVKSVYVMLLSVIIQIILGVVTLLLHIPITIAISHQMFSFILFGSGLCFLCYLRKQN |
| 3RMK Chain:A ((343-360)) | -----------------------------------------WNPAAGVTP--EERDWLEEKYPGWNKRWGRCWDVITENVLNDRMDLVSPETLPSVCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQQDPVQYQNHMNIVDRFLAGQIQPMTLEGALKYMGFQSIEEMGKDAHDFAWADKCK---------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RMK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 3948 for 62 contacts (63.7/contact) +
2D Compatibility (PS) -1844 + (NN) -832 + (LL) 17764
1D Compatibility (HY) -400 + (ID) 600
Total energy: 18036.0 ( 290.90 by residue)
QMean score : 0.504
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