Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVKIRLARFGAKKRPFYRIVVADSRAPRDGRFIERIGQYDPMLSKDNKNCVVVKADRLKYWLNVGAQASERVLWFIKK-GIITLEAEKKKVETKKAEIKKVKEQEV
1IBM Chain:P ((2-83))
--VKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDP--RKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQE---------------------
General information:
TITO was launched using:
RESULT:
Template:
1IBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58666 for 535 contacts (-109.7/contact) +
2D Compatibility (PS) -8209 + (NN) -1498 + (LL) 3008
1D Compatibility (HY) -6400 + (ID) 2000
Total energy: -73765.0 ( -137.88 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_1IBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IBM-query.scw
PDB file :
Tito_Scwrl_1IBM.pdb
: