Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVENEGVLLVLSSPSGAGKTTILERLLERSTNLVRSVSMTTRKPRPGEINGKDYFFVTKKEFHELCEAGQMLEYARVFENFY--GIPKSFIEQNLSSGISVLLSIDWQGAFHLFELMREKVISVFILPPSMEELRLRLQKRNSDSASEIEHRLAEAQKEMSKRDKYDYVVINDDIDKSVEEISSILDKERLKRSGV
1Z8F Chain:A ((23-202))
------GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRCPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAV-TVFLAPPSWQDLQARLIGRGCETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG--------
General information:
TITO was launched using:
RESULT:
Template:
1Z8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91753 for 1265 contacts (-72.5/contact) +
2D Compatibility (PS) -20018 + (NN) -14097 + (LL) 1380
1D Compatibility (HY) -13200 + (ID) 3350
Total energy: -141038.0 ( -111.49 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_1Z8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z8F-query.scw
PDB file :
Tito_Scwrl_1Z8F.pdb
: