Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPELPEVEIISNFLFDKIKNKQISGVTVNNWNL-RVPI-TQNIDDVIKGKVINNIKRRGKYIIWHIDNDIVVTVHLGMSGKLIYAKGEQAQNKHDHVIFSFSDNTSIIFNDPRKFGLVIILNKEQ--EVNFFNDFGIEPFTDEFNGDYLQKLLKSKKVNIKSALMNNKLIVGIGNIYASESLFRARISPLRSAQDLTYKECEKLATEIKNTLSDAIIAGGSTLKDYAQPSGSVGYFQNSFYVYGKVQKPCKICNNTITLIRQNGRSTYFCNACQN
3GQ5 Chain:A ((1-273))
-PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALIS-HLRMEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVM---------------------HLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR
General information:
TITO was launched using:
RESULT:
Template:
3GQ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142874 for 1955 contacts (-73.1/contact) +
2D Compatibility (PS) -26969 + (NN) -12002 + (LL) 660
1D Compatibility (HY) -16400 + (ID) 4350
Total energy: -201935.0 ( -103.29 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_3GQ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GQ5-query.scw
PDB file :
Tito_Scwrl_3GQ5.pdb
: