Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDYILASLSLPFFITENYLLITALVPLLSAVVILFTGKWPTVSNGITVASSVLLFVYTCLCTLYWAYGDHSQFILINFGNNLH--VSLKLESTGVVFSLLISFLWILTSIYTIYYMQNNYPDSNYSDFLCFLLVSISCTMFIAFSGDLLTTFVFYELLTISTYPLVTYNAT-----NESTIAGRYYFGVLFFSSLVLFFPVLGL----LYNEFH--TLDFVSSGIFEFDTSLVTFTAVCFTMLIYGL-GKAALMPMHFWLPRAM-VAPTPVSALLHAVAVVKSGAFIIVKVILYTFGIDNLQRFAQQNWFAGGWLPYAAGFTIIAASLIALKQKELKRLLAYSTVSQLSYIILFASIFSDLSARVAIFQLVCHAFAKITLFFIAGSIITKTGEKYIDRIHGIGRSMPVTMVAFAIGALSMIGVPPASTFWGKFLIFQAVFNSGNIALSVFVTLVLTVGTVLNAMYFLPIIYNAFFSKSSKNF---FIKKIPVFLILPPVITAICTFIIFLVTPFILPLC |
| 3RKO Chain:M ((70-488)) | ----------------------------------------------------------------------------PWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEK---Y--QGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQAS-GLVMLIAILALVFVHYNATGVWTFNYEELLNTPM---SSGVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDL-AGILLKTAAYGLLRFSLPLFPNAS--------AEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPV-----ITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFMILLLVVLLVLLGFYPQPILDTS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -500992 for 3572 contacts (-140.3/contact) +
2D Compatibility (PS) -39928 + (NN) -491 + (LL) 8136
1D Compatibility (HY) -36800 + (ID) 3700
Total energy: -573775.0 ( -160.63 by residue)
QMean score : 0.337
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