Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQFFLPKNSKINKKGKVYPAPTKAKNVRRFQIYRWSADDKKN-PRVDTFFIDMDNCGSMVLDALIKIKDEIDPTLTFRRSCREGICGSCAMNIDGTNTLACTKSI-PDIKGDVKIYPLPHMYVIKDLVSDLSQFYEQYKSVNPWLQA-DKPNLLNQEYSQSPEDRKKLDGLSDCILCACCSTGCPNYWWNNDKFLGPAILLQAYRWIADSRDNKTDERLDALNDPFKLYRCHTIMSCTKTCPKGLNPAKAIAKIKQLMVERKGF
3AE7 Chain:B ((9-246))
-------------------------PRIKKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKMMATYKE-
General information:
TITO was launched using:
RESULT:
Template:
3AE7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144583 for 1759 contacts (-82.2/contact) +
2D Compatibility (PS) -25169 + (NN) -12711 + (LL) 1220
1D Compatibility (HY) -30400 + (ID) 7850
Total energy: -219493.0 ( -124.78 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_3AE7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AE7-query.scw
PDB file :
Tito_Scwrl_3AE7.pdb
: