Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLSVIGIKEPVSNKQLYEHCDIRIIFTKRDVIPVPRHWDPEDSITNGHTKQLYNKNWIPVSRTGMTGKGFEMTESNTGKLVHDRKLLFISSDIKSFFFAIRIE
3IYM Chain:A ((185-237))
------------------FEHAVSRVVFLADQL------W------TNGNSHHIFARSWLPMSN----------NDGNFKTIVASRLLEFISAGDLSILPTVLED
General information:
TITO was launched using:
RESULT:
Template:
3IYM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9302 for 293 contacts (31.7/contact) +
2D Compatibility (PS) -5085 + (NN) 3984 + (LL) 1912
1D Compatibility (HY) -5200 + (ID) 100
Total energy: 4813.0 ( 16.43 by residue)
QMean score : -0.078
(partial model without unconserved sides chains):
PDB file :
Tito_3IYM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IYM-query.scw
PDB file :
Tito_Scwrl_3IYM.pdb
: