Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKIATWNVNSIRK-RVDQLCSFIVDDQIDIILLQEIKCTEEQFPYVEIEKLGYECIVYGEVAR--NGVCVLSKHPILEKFKIDIVEGYQEARY-IECLIK-HNNQKMRVVSIYVPNGQSLGSHVFEYKLKFLDNLYERMDNLLKNEELIVIAGDYNVAPDEIDVFDPTLLNGQVCFHIKEREKLKAILNLGFKDAFRMSHPNLQQFSWWRYQGNSLRNNQGMRIDHMLLSPQAVDKLGICYIDDRLRKLENPSDHTPIVSIMEW
3G0A Chain:A ((3-251))
VLKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVP-----PSSLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGK-MSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSDVMG----SDHCPIGLEIEL
General information:
TITO was launched using:
RESULT:
Template:
3G0A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117190 for 1926 contacts (-60.8/contact) +
2D Compatibility (PS) -26040 + (NN) -11899 + (LL) 712
1D Compatibility (HY) -14400 + (ID) 3600
Total energy: -172417.0 ( -89.52 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_3G0A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G0A-query.scw
PDB file :
Tito_Scwrl_3G0A.pdb
: