Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDDNVAIVFNLTGNNPYNSFDNSTKNSRALEGVKCYSASKTEELCKVIKKRVTKKDYRENQESGQDKTPRKCKKLFKKGASPEVLTKLGELLIEQEKYYNNYIQHF--LPALKREIIKSKELNLIEKIKIEQIIMKLITSDAVSKNSNESHSNAETNEQSANGADNTLSCTAENSESGNTCEETSLKCWRSLPNLRDNSQFNFGEKLLTKMDTLEPETNASELNNGSGGDSGVSLPGLSEDGLESPLGSERSNVSSILSSAEEDNNLQKEENENQMKLDQTAREELQVQENKNQVSKVSPVQPPKKKKNVEDITMQKLPMNEKKGENILPKEQLSNREFYGIFTTGCALLAIGCFVGAVVIKSRALFLGLSVIAVVFATAAVAVWYLTLPPSSKLMYTNSSPVINNERSLLHV |
2KJW Chain:A ((13-73)) | ------------------------------------------------------------------------------EMPEDRVNDLARELRIRDNVRRVMVVASTTPGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KJW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10164 for 340 contacts (-29.9/contact) +
2D Compatibility (PS) -6334 + (NN) -1909 + (LL) 16880
1D Compatibility (HY) -400 + (ID) 300
Total energy: -2227.0 ( -6.55 by residue)
QMean score : 0.430
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