Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEYQGVNTVKKDRKPITITANAVERIRYLLDQKQYTNLERSEEAIGIRVLIKQKGCSGLKYDIEYAYDIHPLESVIEESCSDGQKVKVLIDPKSVMFILGSEMDYVEEKFSSGFVFKNPNEKGKCGCGESFHV
3VTI Chain:D ((167-200))
-----------------------------------------------------------LQFDTPIFSDVAPLNGLIEKLMTLGEAIKVLRDPTRGGVAEVLYEISKMSGVGIKIYEEKLPVKESVKSACEFMG
General information:
TITO was launched using:
RESULT:
Template:
3VTI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3093 for 111 contacts (-27.9/contact) +
2D Compatibility (PS) -3600 + (NN) -920 + (LL) 4456
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -7007.0 ( -63.13 by residue)
QMean score : 0.357
(partial model without unconserved sides chains):
PDB file :
Tito_3VTI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VTI-query.scw
PDB file :
Tito_Scwrl_3VTI.pdb
: