Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSNYFALFKIEPAFNISLDELEKKYIELSKTDINER-----------QSQNMENINKAYQVLKSPLKRAEHLLNLFGVRSQEDQ---HNFEILNESMEIREYLLDCNNL------QLASGMIDEKIKDCIKNLTNNFAVKNFDEAAMQVLRLKYLYKSFEEIKNETNSNF
1FPO Chain:A ((1-168))
--MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQLEEKLL
General information:
TITO was launched using:
RESULT:
Template:
1FPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42714 for 936 contacts (-45.6/contact) +
2D Compatibility (PS) -16186 + (NN) -12587 + (LL) 180
1D Compatibility (HY) -5200 + (ID) 1700
Total energy: -78207.0 ( -83.55 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_1FPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FPO-query.scw
PDB file :
Tito_Scwrl_1FPO.pdb
: