Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNINNRIGIYPGTFDPITFGHIDIIKRACKLVDRLIIGVAENINKHTTFDAKLRTSMAENEIKRLEIDVDVVSFNGLLVKFAKEQNASVIIRGLRAVSDFDYEFQMSWVNYKLLPEIETIFLPASEDTQFISSSFVKEIARLGESVSKFVSVGVQKELINLNRIGSE
3F3M Chain:A ((1-155))
--MEHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLK-----GTFSLEERMDLIEQSVKHLP-NVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK----
General information:
TITO was launched using:
RESULT:
Template:
3F3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104061 for 1158 contacts (-89.9/contact) +
2D Compatibility (PS) -15657 + (NN) -3288 + (LL) 704
1D Compatibility (HY) -16000 + (ID) 3300
Total energy: -141602.0 ( -122.28 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_3F3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F3M-query.scw
PDB file :
Tito_Scwrl_3F3M.pdb
: