Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLDIRLFRNE--PDTVKSKIELRGDDPKVVDEILELDEQRRKLISATEEMKARRNKVS------------EEIALKKRNKENADDVIAEMRTLGDDIKEKDSQL----NEIDNKMTGILCRIPNLISDDVPQGESDE-DNVEVKKWGTPREFSFEPKAHWDIVEELKMADFDRAA-KVSGARFVYLTNEGAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKVEKEG--LYTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEMVRFEQP--EDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDIEVWLPSYNDYKEISSCSNCTDFQARRANIRFK---RDKAAK--PELAHTLNGSGLAVGRTFAAIVENYQNEDGTVTIPEALVPFMGGKTQISKPVK |
3LSQ Chain:A ((7-463)) | VLDIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEA----------------VLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGNTTKRA--KLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSL-DFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEA-------LGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCHMLNGTLCAITRTMCCICENYQTEEG-VVIPDVLRPYMMG--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LSQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -97003 for 3172 contacts (-30.6/contact) +
2D Compatibility (PS) -41657 + (NN) -15519 + (LL) 1932
1D Compatibility (HY) -31200 + (ID) 7200
Total energy: -190647.0 ( -60.10 by residue)
QMean score : 0.414
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