Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNKTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQ---YYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNKK
2BV6 Chain:A ((31-135))
---KKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTG----TVSPLLKRMEQVDLIKRER-SEVDQREVFIHLTDKSETIRPELSNASDKVASAS------------SLSQDEVKELNRLLGK-
General information:
TITO was launched using:
RESULT:
Template:
2BV6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37720 for 625 contacts (-60.4/contact) +
2D Compatibility (PS) -10813 + (NN) -1900 + (LL) 1176
1D Compatibility (HY) -7200 + (ID) 1300
Total energy: -57757.0 ( -92.41 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_2BV6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BV6-query.scw
PDB file :
Tito_Scwrl_2BV6.pdb
: