Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATKKDVHDLFLNHVNS-NAVKTRKMMG--EYIIYYD----SVVIGGLYD----NRLLVKATKSVRHQLQDN--TLVSPYP--GAKEMILIPD--ITEAINLTNLFELIKNDLKN
2A1V Chain:A ((6-114))
---PMQTVDDLRSVCDELPHSLETFPFDDETLVFKVGYLSKSRMYALTDITQDPLRLSLKVDPERGEELRQAHPQSIAPGYHLNKKHWVTVTLDGTVPAELLGELLRGSYLL---
General information:
TITO was launched using:
RESULT:
Template:
2A1V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45505 for 621 contacts (-73.3/contact) +
2D Compatibility (PS) -10189 + (NN) -4799 + (LL) 564
1D Compatibility (HY) -400 + (ID) 550
Total energy: -60879.0 ( -98.03 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_2A1V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A1V-query.scw
PDB file :
Tito_Scwrl_2A1V.pdb
: