Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKFFVLCAIISMNIFIVISTFTKEVL---GFPIEPVYYSTMVGIALITTVFAIYKIIVTQEIPRGLILLIAICLLYLAFYYFSPDKEEKLAKNNILFFLTWAV--PAAISGIYIKYINKATVERFFKLVFFIFSISFIFVILIPKLTGEIPSYINFGLMNYQNASYLSAFTAGLGIYFIMKGSVKHKWIYVLFTIIDIPIVFIPGGRGGAILLILYGLFAFILITFKRGIPIAVKSIMYIFA---LSISSVLIYFLFTKGSNT-RTFSYLQGGTLNLEGTSGRGPIYEKGIYFIQQSPLLGYGPFNYYKLI----GNIPHNIIIELILSFGLLGFFIIMICILLLVYKMIRNYDPNTIDLLVMFIAI---------YPITLLMFSSNYLVVSEFWFVLFYFITKGRRHHG--- |
| 3E4B Chain:A ((6-434)) | DQRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLAAQARLGRLLAAKATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAA---------LNTTDICYVELATVYQKKQQ-PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP--------DEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLLQLHA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3E4B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -353422 for 2932 contacts (-120.5/contact) +
2D Compatibility (PS) -37437 + (NN) -6985 + (LL) 1920
1D Compatibility (HY) 26400 + (ID) 1750
Total energy: -371274.0 ( -126.63 by residue)
QMean score : 0.245
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