Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRLFDVVSSIYGLVVLSP-------ILLITALLIKMESPGPAIFKQKRP--TINNELFNIYKFRSMKI-DTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
1J54 Chain:A ((7-180))
RQIVLDTETT--GMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFD-----IGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKR--------TLHGALLDAQILAEVYLAMTG------
General information:
TITO was launched using:
RESULT:
Template:
1J54.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52894 for 1237 contacts (-42.8/contact) +
2D Compatibility (PS) -17145 + (NN) -4714 + (LL) 1672
1D Compatibility (HY) -5600 + (ID) 1250
Total energy: -79931.0 ( -64.62 by residue)
QMean score : 0.210
(partial model without unconserved sides chains):
PDB file :
Tito_1J54.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J54-query.scw
PDB file :
Tito_Scwrl_1J54.pdb
: