Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVPEEKGSITLSKEA-------AIIFATAKFKP------FKNRIKNNPLKTNPFLKLHENKKS--------
1NY4 Chain:A ((1-71))
MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIKSRR
General information:
TITO was launched using:
RESULT:
Template:
1NY4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6590 for 253 contacts (26.0/contact) +
2D Compatibility (PS) -5185 + (NN) 700 + (LL) 0
1D Compatibility (HY) -1600 + (ID) 350
Total energy: 155.0 ( 0.61 by residue)
QMean score : 0.147
(partial model without unconserved sides chains):
PDB file :
Tito_1NY4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NY4-query.scw
PDB file :
Tito_Scwrl_1NY4.pdb
: