Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRK-ERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRSKLKVKDLVFVDDSVKRYK
1DY3 Chain:A ((3-142))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEM----------------
General information:
TITO was launched using:
RESULT:
Template:
1DY3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95651 for 1039 contacts (-92.1/contact) +
2D Compatibility (PS) -14501 + (NN) -5393 + (LL) 1800
1D Compatibility (HY) -11600 + (ID) 2850
Total energy: -128195.0 ( -123.38 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1DY3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DY3-query.scw
PDB file :
Tito_Scwrl_1DY3.pdb
: