Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNFNKLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKA----LNQLGQKCDVITYEFENISAQQLKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSE--CVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKTIVPARIDKTAEAKEQVNKI-IQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIELLKPAVMMNLLG-----KDLDLLENEFNEHPEWHLHIYGKSGRKDSRKMGHMTVLTNDVNQTEQDMYAKFEGSN |
| 4MAM Chain:A ((3-345)) | -----------IGIIGAGQLARMLSLAGTPLGLEFHCLGKNGDC-----AEEVVKTVTDIELTKVNDVVAWAKQFDVITFENENISHELIKAINHEVSVYPSAKAIAISQDRLLEKSFMQDHGIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRFGYDGKGQFVIRSQEDITKAWDVLKDAPDGLIYEAFVDFDYEVSQICTADLKGNIAFYPLARNTHKQGIIVESEAPFENVVLAEKAQQIAKILVKEFAYVGTLAIEFFV-KGDELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGLILGDTTS--RKTVMLNCIGGMPATKDLAALD-------RVKIHSYNKEPRK-GRKVGHLNLNLND---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MAM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -111643 for 2806 contacts (-39.8/contact) +
2D Compatibility (PS) -36950 + (NN) -19406 + (LL) 2120
1D Compatibility (HY) -28000 + (ID) 5850
Total energy: -199729.0 ( -71.18 by residue)
QMean score : 0.476
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