Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVT--EQ----TRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNEDKQILERYKIGLKKG
4H3Y Chain:A ((22-249))
MQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNDAQSAVQDSFVDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLI-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4H3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125843 for 1555 contacts (-80.9/contact) +
2D Compatibility (PS) -24264 + (NN) -11486 + (LL) 1384
1D Compatibility (HY) -22800 + (ID) 5050
Total energy: -188059.0 ( -120.94 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_4H3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H3Y-query.scw
PDB file :
Tito_Scwrl_4H3Y.pdb
: