Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGETVLKSPSIYEVIKEIGEFSEHHFYCAIFIPSTEDHAYQLEKKLISVDDNF-RNFGGFKSYRLLRPAKG-TTYKIYFGFADRHAYEDFKQSDAFNDHFSKDALSHYFGSSGQHSSYFERYLYPIKE
3BM7 Chain:A ((18-113))
---------------------------------------------------------------QGMIGVVATLKVQPAKAAEFEKVFLDLAAKVKANEPGCLVYQLTRSKTEEGVYKVLELYASMDALKHHGGTDYFKAAGAAM------GPTMAGAPVIEYLDA----
General information:
TITO was launched using:
RESULT:
Template:
3BM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26290 for 618 contacts (-42.5/contact) +
2D Compatibility (PS) -10437 + (NN) -5830 + (LL) 4904
1D Compatibility (HY) -3600 + (ID) 800
Total energy: -42053.0 ( -68.05 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_3BM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BM7-query.scw
PDB file :
Tito_Scwrl_3BM7.pdb
: