Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNAIELSNVNYSSDQFNLKNISFKVPQGFVTGFIGRNGAGKTTIIRLIMDLYQPQTGVI---RVLEEDMALNPIELKNSIGFVYSENYFNERWTTKQLEKM-IAP-----FYRKWDHQVFEFYLEKFDLPINKS---IKTFSTGMKMKLSLAVAFSHHAELYIFDEPTSGLDPLARNELLEIIQQELIDENKTIFMSTHIISDLEKIADYIIHLSDGEVILNGSKEQLLQRYQVVSGATEDLDDELASLLIYEEHKRTGFIGLTEHAQVFKEILGHKVNITTPSIENLMVYLEKRKPKYHENIKLMEEGF |
| 4YMV Chain:J ((17-228)) | -----------------LKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGKVNINKVRQKVGMVFQ--HFNLFPHLTAIENITLAPVKVKKMNKKEAEELAVDLLAKVGLLDKKDQYPIK-LSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQ-LANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAK----------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4YMV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -126608 for 1541 contacts (-82.2/contact) +
2D Compatibility (PS) -21509 + (NN) -9314 + (LL) 7016
1D Compatibility (HY) -13200 + (ID) 3200
Total energy: -166815.0 ( -108.25 by residue)
QMean score : 0.490
|
|
|