Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIIIGSDEAGKRLKEVIKSYLLDNKYDVVD---VTEGQEVDFVDATLAVAKDVQSQEGNLGIVIDAFGAGSFMVATKIKGMIAAEVSDERSGYMTRGHNNSRMITMGSEI--VGDTLAKNVVKGFVEGKYD-GGRHQIRVDMLNKMC
2VVP Chain:A ((4-145))
MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALA--IVDAFVTTPWSKAQRHQRRIDIL----
General information:
TITO was launched using:
RESULT:
Template:
2VVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89177 for 1153 contacts (-77.3/contact) +
2D Compatibility (PS) -14509 + (NN) -6881 + (LL) 232
1D Compatibility (HY) -6000 + (ID) 2100
Total energy: -118435.0 ( -102.72 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_2VVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VVP-query.scw
PDB file :
Tito_Scwrl_2VVP.pdb
: