Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFNQFENQNFFNGNPSDTFKDLGKQVFNYFSTPSFVTNIYETDELYYLEAELAGVNKEDISIDF-NNNTLTIQATRSAKY--KSEQLILDERNFESLMRQFDF-EAVDKQHITASFENGLLTITLPKIKPSNETTSSTSIPIS
2BYU Chain:A ((50-144))
-----------------------------------------ETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK----------------
General information:
TITO was launched using:
RESULT:
Template:
2BYU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43618 for 462 contacts (-94.4/contact) +
2D Compatibility (PS) -8681 + (NN) 1878 + (LL) 1896
1D Compatibility (HY) -5200 + (ID) 1350
Total energy: -55075.0 ( -119.21 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_2BYU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BYU-query.scw
PDB file :
Tito_Scwrl_2BYU.pdb
: