Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA-----KTITYYTVPHAPAQDIVVKGYEDVT--NTFDVIIIAVKTHQLDAVIPHLTYLAHEDTLIILAQNG----------------------YGQL-EHIPFKNVCQAVVYISGQKKGDV-VTHFRDYQLRIQDNALTRQFR-----DLVQDSQIDIVLEANIQQAIWYKLLVNLGINSITAL-GRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMTIYQGYPDEMG---TSMYYDIVHQQPLEVEAIQGFIYRRAREHNLDTPYLDTIYSFLRAYQQNM |
3GHY Chain:A ((4-321)) | ---ICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAALGEQDVVIVAVKAPALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLVSAFCLAVMAEAKAIGARIGCPI-EQSGEARSAVTR----QLGAFKTSMLQ----RGPLEIDALVASVREIGLHVGVPTPQIDTLLGLVRLHAQT- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GHY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217563 for 2139 contacts (-101.7/contact) +
2D Compatibility (PS) -29258 + (NN) -5070 + (LL) 604
1D Compatibility (HY) -14800 + (ID) 3300
Total energy: -269387.0 ( -125.94 by residue)
QMean score : 0.433
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