Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLESLRGFAYAFFTILFT-LFLYAYIFSMYRKQKKGI--VDYERYGYL-ALNDALEDELIEPRHKEVHDKGIKES
3ERM Chain:A ((21-87))
VDRKLADAHD--------QMLELAELLTDVLIKNVPGLSEKHAEDASIYMAKNRAVFAAAFKNN-ATALSELSEPA
General information:
TITO was launched using:
RESULT:
Template:
3ERM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7229 for 311 contacts (-23.2/contact) +
2D Compatibility (PS) -6808 + (NN) -5029 + (LL) 1108
1D Compatibility (HY) 400 + (ID) 450
Total energy: -18008.0 ( -57.90 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3ERM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ERM-query.scw
PDB file :
Tito_Scwrl_3ERM.pdb
: