Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIRTPKHLTKQESVNLGAYYTPPYLVDCAYKLLKKHVGIENYTLLDTACGNKEFLKLHHPKK------IGADIDPKCDALIINALANPKRENYGISQD----EPL----IIVGNPPYNDRTSFIKQDIKNKDFIFEIDNDLKSR---------DLGISFL-KSFAILKPAFICV-LHPLSYLIKEANFKQLKLFKDHYRLLDAFVVSSKSFTKSNEFPIVIALYERGRMDYAGIRRFVFPTDCDTTLCLNDFDYIANYVDKYPNAKKVGACVGYFFPMRDINALKRNKTFLNAPSENAVRISQDKLIYYQYIHYFKEIAPKIPYYFGNLDIIIDHFAFLEIKDAFLKDKRARLEYFKKLFQGHPCEFD |
| 1G38 Chain:A ((3-160)) | --------------------TPPEVVDFMVSLAEAPRGGR---VLEPACAHGPFLRAFREAHGTGYRFVGVEIDPK--ALDLPPWAE------GILADFLLWEPGEAFDLILGNPPYG----IVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLE-DFALLREFLAREGKTSVYYLGEVFPQKKVSAVVIRFQKSGKGLSLWDTQESESGFTPILWAEYPHWEGEIIRFETEETRKLEISGMPLGDLFHIRFAARSPEFKKHPAVRKEPGPGLVPVLTGRNLKPGWVDYEKNHSGLWMPKERAKELRDFYATPHLVVAHTKGTRVVAAWDERAYPWRE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1G38.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -38868 for 863 contacts (-45.0/contact) +
2D Compatibility (PS) -13609 + (NN) -1689 + (LL) 1840
1D Compatibility (HY) -10800 + (ID) 2450
Total energy: -65576.0 ( -75.99 by residue)
QMean score : 0.339
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