Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKMNKVVLHKEYSGFVRFFHWVRALSIFTLIATGFYIAYPFLQPNSSFYKGVYLLQAYVRSFHVMFGFLLISALIFRTYLFFTKESLMERRSFSQLLSPKAWIDQMKAYFLISDKPHTKGLYNPIQLVAYFTLVVLIVLMSLSGIVLYYNVYHEGLGAFLANAFKWFEA---LCGGLANVRFIHHLATWGFILFVPVHVYMVFFHSIRYDSSGADSMINGYGYTKE
3CX5 Chain:C ((38-106))
---------------------------------------------------------------------------------------------------------------------------------------LCLVIQIVTGIFMA-MHYSSNIEL----AFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILT
General information:
TITO was launched using:
RESULT:
Template:
3CX5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43013 for 341 contacts (-126.1/contact) +
2D Compatibility (PS) -6843 + (NN) -3016 + (LL) 12592
1D Compatibility (HY) -5600 + (ID) 550
Total energy: -46430.0 ( -136.16 by residue)
QMean score : -0.041
(partial model without unconserved sides chains):
PDB file :
Tito_3CX5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CX5-query.scw
PDB file :
Tito_Scwrl_3CX5.pdb
: