Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGENFTTNNRMELRALNEALKILKRPCHITLYSDSQYVCQAINVWLVNWQKKNF-----AKVKNVDLWKEFVKVSKGHSIVAVWIKGHNGHAENERCNSLAKLEAQKRVKTTT
2RN2 Chain:A ((2-141))
LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDT
General information:
TITO was launched using:
RESULT:
Template:
2RN2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59236 for 1076 contacts (-55.1/contact) +
2D Compatibility (PS) -14556 + (NN) -7922 + (LL) 0
1D Compatibility (HY) -8400 + (ID) 3700
Total energy: -93814.0 ( -87.19 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_2RN2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RN2-query.scw
PDB file :
Tito_Scwrl_2RN2.pdb
: