Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKNDDFVIAKNQLGNIVPNSVGVIRAVNGKSAMVLFIGLNELKRVDFSELEAIDIYRTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHDTGWGREWICDSCNTGLGRFKDNPKFLEKVIEYLKKYEK
3GOX Chain:B ((11-199))
MLKNDDFVIAKNQLGNIVPNSVGVIRAVNGKSAMVLFIGLNELKRVDFSELEAIDIYRTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHDTGWGREWICDSCNTGLGRFKDNPKFLEKVIEYLKKYE-
General information:
TITO was launched using:
RESULT:
Template:
3GOX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47899 for 1263 contacts (-37.9/contact) +
2D Compatibility (PS) -19866 + (NN) -3431 + (LL) 64
1D Compatibility (HY) -26000 + (ID) 9450
Total energy: -106582.0 ( -84.39 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_3GOX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GOX-query.scw
PDB file :
Tito_Scwrl_3GOX.pdb
: