Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKIQKIHPNALIPKYQTEGSSGFDLHAVEEVVIKPHSVGLVRIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTY-KAEFIECEQLDETSRGSGGFGSTGVSKA
3F4F Chain:A ((29-163))
--LKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQ--TGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLEESARGAGGFG-------
General information:
TITO was launched using:
RESULT:
Template:
3F4F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63666 for 869 contacts (-73.3/contact) +
2D Compatibility (PS) -14270 + (NN) -2958 + (LL) 864
1D Compatibility (HY) -8400 + (ID) 2400
Total energy: -90830.0 ( -104.52 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_3F4F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F4F-query.scw
PDB file :
Tito_Scwrl_3F4F.pdb
: