Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDEIKTLLVDFFPQAKHFGIILIKAIVVFCIGFYFSFFLRNKTMKLL-SKKDEILANFVAQVTFILILIITTIIALSTLGVQTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISGLEGKVEALNFFNTSLRLHDGRLAVLPNRSVANSNIINSNNTACRRIEWVCGVGYGSDIELVHKTIKDVIDGMEKIDKNMPTFIGITDFGQSSLNFTIRVWAKIEDGIFNVRSELIERIKNALDANRIEIPFNKLDISINKQDSSK
5AJI Chain:G ((26-278))
----------------SYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVAFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGD-LQNVYWDVLERIKREFDAAGISFPYPQMDVNFK------
General information:
TITO was launched using:
RESULT:
Template:
5AJI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149903 for 1649 contacts (-90.9/contact) +
2D Compatibility (PS) -26083 + (NN) -5940 + (LL) 1420
1D Compatibility (HY) -28400 + (ID) 4150
Total energy: -213056.0 ( -129.20 by residue)
QMean score : 0.352
(partial model without unconserved sides chains):
PDB file :
Tito_5AJI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AJI-query.scw
PDB file :
Tito_Scwrl_5AJI.pdb
: