Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFQNENKLKVGASVKATI-NDKVVEAKVISIGF-NRVTLRSEKGQRSHLRFQ
2LDM Chain:A ((85-125))
------SEFQINEQVLASWSDSRFYPAKVTAVNKDGTYTVKFYDGVV------
General information:
TITO was launched using:
RESULT:
Template:
2LDM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4661 for 195 contacts (-23.9/contact) +
2D Compatibility (PS) -4027 + (NN) 1495 + (LL) 856
1D Compatibility (HY) -3200 + (ID) 350
Total energy: -9887.0 ( -50.70 by residue)
QMean score : 0.679
(partial model without unconserved sides chains):
PDB file :
Tito_2LDM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LDM-query.scw
PDB file :
Tito_Scwrl_2LDM.pdb
: