Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQKRVVILLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRNGVLKLPNLEGLGLG-LSALKAAN--ELPLGFQLKPNLIGAYAYAKELSSAKDTISGHWEMMGAPVLFEWGYFKDKNDSFPKEILDEIMHKTKIKGYLGNCHASGTEIIKDLGEKHLETLYPIFYTSADSVFQIAAHEERFGLDHLYALCEEAFQIL--EPLKIARVIARPFIGTNRENFKRTANRKDYAIKPHKKLLFETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLDQVKNAPNNSLIFTNFVHFDSDYGHRRDVSGYANALEYFDARLKEVLDNLRENDLLILCADHGCDPSFKGTDHTREYIPVLFYHKDLQPAF--LGKSETFADIGQSIAYFLGLSPLDYGKNLLNFKGQP |
| 4LR8 Chain:A ((27-412)) | --KRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHM----------NG-LQMPNMVKLGLGNIREMKGISKVEKPLGY---------YTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPE---GFPKELLDELEEKTGRK-IIGNKPASGTEILDELGQEQMETGSLIVYTAADSVLQIAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVG-EPGNFTRTPNRHDYALKPFGRTVMNE-LKDSDYDVIAIGKISDIYDGEGVTESLRTKSNMDGMDKLVDTL-NMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFAKLKEDDLLLITADHGNDPIHPGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNEL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LR8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -296711 for 3506 contacts (-84.6/contact) +
2D Compatibility (PS) -40190 + (NN) -9718 + (LL) 1152
1D Compatibility (HY) -32800 + (ID) 8950
Total energy: -387217.0 ( -110.44 by residue)
QMean score : 0.549
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