Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKTLLLSLSLSFGLHAEDDGFYASAGIRIGEAAQMVKNTKGIQQLSENYEKLNNLLNNYNTLNTLVKLSSDPSAVNDARDNLGSSTRNLLDVKANSPAYQAVLLALNAAVGLWQVTSYAFTACGPGSNENANGGIQTFNNVPGQNTTTITCNSYYEPGHGGPISTKNYAIINKAYQIIQKALTANGEGIPVLSNTTTKLDFTINGDKRTGGEPNKKLVYPWSHGKAISTSWNATITAPTTENINTTNSAQELLKQASIIITTLNSACPNFQNGGSGYWAGISGNGTMCGMFKNEISAIQGMIANAQEAVAQAKIVSENTQNQNSLDAGKPFNPYTDASFAESMLKNAQAQAEILNQAEQVVKNFEKIPTAFVNDSLGVCYEVQGGERRGTNPGQTTSNTWGAGCAYVGQTITNLKNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSNIPNAQSLQNAVSKKNNPYSPQGIDTNYYLNQNSYNQIQTINQELGRNPFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARPKKKDSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY |
4AMW Chain:B ((412-450)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTKGEFWTANRVGTGGDPNNRSVFEWAHDKGLVCQTNITCFLRNDNEGQDYEVNQTLRERQLYTKNDSLTGTDFGMTDDGPSDAYIGHLDYGGGVECDALFPDWGRPDVAEWWGNNYKKLFSIGLDFVWQDMTVPAMMPHKIGDDINVKPDGNWPNADDPSNGQYNWKTYHPQVLVTDMRYENHGREPMVTQRNIHAYTLCESTRKEGIVENADTLTKFRRSYIISRGGYIGNQHFGGMWVGDNSTTSNYIQMMIANNINMNMSCLPLVGSDIGGFTSYDNENQRTPCTGDLMVRYVQAGCLLPWFRNHYDRWIESKDHGKDYQELYMYPNEMDTLRKFVEFRYRWQEVLYTAMYQNAAFGKPIIKAASMYNNDSNVRRAQNDHFLLGGHDGYRILCAPVVWENSTERELYLPVLTQWYKFGPDFDTKPLEGAMNGGDRIYNYPVPQSESPIFVREGAILPTRYTLNGENKSLNTYTDEDPLVFEVFPLGNNRADGMCYLDDGGVTT |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AMW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 5803 for 193 contacts (30.1/contact) +
2D Compatibility (PS) -3995 + (NN) -2259 + (LL) 9652
1D Compatibility (HY) -400 + (ID) 750
Total energy: 8051.0 ( 41.72 by residue)
QMean score : 0.203
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